Publications by the researcher in collaboration with RUI CARLOS VAQUEIRO DE CASTRO ALVES (30)

2023

  1. Changing biosynthesis of terpenoid percursors in rice through synthetic biology

    Frontiers in Plant Science, Vol. 14

  2. Modeling the effects of strigolactone levels on maize root system architecture

    Frontiers in Plant Science, Vol. 14

2022

  1. A mathematical model for strigolactone biosynthesis in plants

    Frontiers in Plant Science, Vol. 13

2021

  1. Maximization of information transmission influences selection of native phosphorelay architectures

    PeerJ, Vol. 9

2018

  1. Automatic Methods for Carotid Contrast-Enhanced Ultrasound Imaging Quantification of Adventitial Vasa Vasorum

    Ultrasound in Medicine and Biology, Vol. 44, Núm. 12, pp. 2780-2792

  2. Quantitative Operating Principles of Yeast Metabolism during Adaptation to Heat Stress

    Cell Reports, Vol. 22, Núm. 9, pp. 2421-2430

2016

  1. Computer-assisted initial diagnosis of rare diseases

    PeerJ, Vol. 2016, Núm. 7

  2. Identification of line-specific strategies for improving carotenoid production in synthetic maize through data-driven mathematical modeling

    The Plant journal : for cell and molecular biology, Vol. 87, Núm. 5, pp. 455-471

2015

  1. A survey of HK, HPt, and RR domains and their organization in two-component systems and phosphorelay proteins of organisms with fully sequenced genomes

    PeerJ, Vol. 2015, Núm. 8

  2. Gobal optimization of hybrid kinetic/FBA models via outer-approximation

    Computers and Chemical Engineering, Vol. 72, pp. 325-333

2014

  1. An in vitro system for the rapid functional characterization of genes involved in carotenoid biosynthesis and accumulation

    Plant Journal, Vol. 77, Núm. 3, pp. 464-475

  2. Multi-level optimization framework applied to the systematic evaluation of metabolic objective functions

    Computer Aided Chemical Engineering (Elsevier B.V.), pp. 961-966

2013

  1. Identification of regulatory structure and kinetic parameters of biochemical networks via mixed-integer dynamic optimization

    BMC Systems Biology, Vol. 7

  2. Targeted transcriptomic and metabolic profiling reveals temporal bottlenecks in the maize carotenoid pathway that may be addressed by multigene engineering

    Plant Journal, Vol. 75, Núm. 3, pp. 441-455

2012

  1. Two component systems: Physiological effect of a third component

    PLoS ONE, Vol. 7, Núm. 2

2011

  1. Methods for and results from the study of design principles in molecular systems

    Mathematical Biosciences, Vol. 231, Núm. 1, pp. 3-18

  2. Saccharomyces cerevisiae as a model organism: A comparative study

    PLoS ONE, Vol. 6, Núm. 2

  3. Special issue on biological design principles

    Mathematical Biosciences

  4. Steady-state global optimization of metabolic non-linear dynamic models through recasting into power-law canonical models

    BMC Systems Biology, Vol. 5

  5. Teaching systems biology

    IET Systems Biology, Vol. 5, Núm. 2, pp. 131-136